List of Publications
- Hou JT, Sims GE, Zhang C, & Kim SH (2003)
A global representation of the protein fold space.
Proceedings of the National Academy of Sciences, USA.
100, 2386-2390. PDF
- Sims GE, & Kim SH (2003) Global mapping of nucleic acid
conformational space: dinucleoside monophosphate conformations
and transition pathways among conformational classes.
Nucleic Acids Research. 31, 5607-5616.
PDF
- Sims GE, Choi IG, & Kim SH. (2005)
Protein conformational space in higher order phi-psi maps.
Proceedings of the National Academy of Sciences, USA.
102, 618-621.PDF
- Sims GE (2005) Global Mapping and Multivariate Analysis
of Protein and Nucleic Acid Conformations. PhD Thesis. University
of California, Berkeley, Berkeley, California.
PDF
- Sims GE, & Kim SH (2006) HOPPscore: Evaluating the structural quality
of protein models using higher-order phi-psi pairs scoring.
Proceedings of the National Academy of Sciences, USA.
103, 4428-4432. PDF
- Kim SH, Hou JT, Jun SR, Sims GE, Choi IG (2007) Structure, function, and evolution mapping of the protein structure universe
FASEB Journal.
21, A1003-A1003. PDF
- Hsu CT, Sims GE, Kim SH (2008) Mapping Kinase Active Sites by Clique Detection.
California Engineer.
86. PDF
- Sims GE, Jun SR, Wu, GA, Kim SH (2009)
Proceedings of the National Academy of Sciences, USA.
106, 2677-2682. PDF
- Wu GA, Jun SR, Sims GE, Kim SH (2009) Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method
Proceedings of the National Academy of Sciences, USA.
Available in early edition. PDF